| Draft Selection | Draft Source | Position | Player | Age | SI | Pot | Assignment | Team | Statistics | |
|---|---|---|---|---|---|---|---|---|---|---|
| 2048, Rd #6 | College | P | Mickey Shull | 20 | 56 | 11 | Rookie | San Mateo Ninjas | ||
| 2048, Rd #5 | College | 3B | Micheal Brock | 21 | 62 | 11 | AA | San Mateo Ninjas | ||
| 2048, Rd #4 | College | OF | Mario Toledo | 21 | 66 → 68 | 12 | AAA | San Mateo Ninjas | ||
| 2048, Rd #3 | Latin American Academy | OF | Bernardo Carmona | 17 | 54 → 57 | 12 | Rookie | San Mateo Ninjas | ||
| 2048, Rd #2 | College | 1B | Neal Clancy | 21 | 76 → 81 | 13 | AAA | San Mateo Ninjas | ||
| 2048, Rd #1 | Latin American Academy | P | Edgar Ojeda | 18 | 46 → 49 | 11 | Rookie | San Mateo Ninjas | ||
| 2047, Rd #3 | High School | C | J.P. Hamilton | 18 | 66 → 72 | 13 | AA | San Mateo Ninjas | ||
| 2047, Rd #2 | Latin American Academy | C | Álvaro Segura | 21 | 79 → 87 | 13 | AA | San Mateo Ninjas | ||
| 2046, Rd #6 | Latin American Academy | OF | Marcelo Aragon | 23 | 70 → 77 | 11 | AAA | San Mateo Ninjas | ||
| 2046, Rd #5 | College | 2B | Oliver Coughlin | 22 | 69 → 85 | 12 → 13 | AAA | San Mateo Ninjas | ||
| 2046, Rd #4 | High School | P | Norm Henry | 19 | 29 → 37 | 12 | A | San Mateo Ninjas | ||
| 2046, Rd #3 | High School | P | Steve Bradford | 19 | 45 → 54 | 11 → 12 | A | San Mateo Ninjas | ||
| 2046, Rd #2 | College | P | R.J. Clinton | 23 | 60 → 72 | 13 → 12 | Majors | San Mateo Ninjas | G 3, W 0, L 0, ERA 5.68, IP 6⅓, K 3 | |
| 2046, Rd #1 | High School | 2B | Tommy Chapman | 19 | 58 → 69 | 12 | A | San Mateo Ninjas | ||
| 2045, Rd #4 | College | P | Stephen Ellsworth | 24 | 53 → 62 | 12 → 11 | - | - | ||
| 2044, Rd #5 | Latin American Academy | OF | Bartolomé Silva | 23 | 65 → 83 | 11 | AAA | San Mateo Ninjas | ||
| 2044, Rd #4 | College | 2B | Hank Stone | 24 | 77 → 99 | 11 → 12 | Majors | San Mateo Ninjas | G 357, AVE .282, H 376, HR 18, R 146, RBI 173, SB 1 | |
| 2044, Rd #3 | Latin American Academy | OF | Sebastián Vigil | 25 | 68 → 70 | 13 → 12 | - | - | ||
| 2044, Rd #2 | College | 3B | Kent Nugent | 24 | 69 → 97 | 12 | Majors | San Mateo Ninjas | G 273, AVE .239, H 195, HR 17, R 82, RBI 112 | |
| 2044, Rd #1 | Latin American Academy | OF | Rodolfo Rocha | 21 | 56 → 74 | 13 | AAA | San Mateo Ninjas | ||
| 2043, Rd #5 | College | P | Pedro Luque | 25 | 60 → 92 | 13 → 14 | Majors | San Mateo Ninjas | G 75, W 4, L 6, S 39, ERA 4.00, IP 78⅔, K 62 | |
| 2043, Rd #4 | Latin American Academy | C | Javier Santos | 24 | 61 → 81 | 12 | AA | Utica Dragons | ||
| 2043, Rd #3 | Junior College | 3B | Rickey Hicks | 24 | 62 → 90 | 12 → 13 | AAA | San Mateo Ninjas | ||
| 2043, Rd #2 | College | 1B | Casey Hite | 25 | 84 → 103 | 13 | Majors | San Mateo Ninjas | G 325, AVE .263, H 198, HR 12, R 104, RBI 97, SB 23 | |
| 2043, Rd #1 | Latin American Academy | P | Aarón Rosas | 23 | 48 → 113 | 15 → 14 | Majors | San Mateo Ninjas | G 46, W 15, L 9, S 1, ERA 2.44, IP 254⅔, K 192 | |